Hi all,

I got an error when I used predictCoding() in VariantAnnotation package.

> coding <- predictCoding(vcf, txdb, injected_Arabi)
Error in .Call2("DNAStringSet_translate", x, DNA_BASE_CODES, lkup,
skipcode,  :
  in 'x[[24606]]': not a base at pos 3

How can I get the value of x[[24606]]? Any suggestion for the debugging?

Thanks,

Rebecca

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