Typically, how does one handle within-chip probe replicates on the Agilent microarray's to improve the significance of statistical tests?  I am currently using limma, and probes seems to be treated individually and only replicates across chips are considered in the statistical tests.

Tyler Reed
Associate Bioinformatics Developer
Thermo Scientific Genomics

Thermo Fisher Scientific
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Lafayette, CO  80026
Direct: (303) 604-3265
tyler.reed@thermofisher.com<mailto:tyler.reed@thermofisher.com>
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