Hello,
yes now it works like this:
> tab <- topTags(lrt, n=Inf)
> write.table(tab, file="mygenelist.txt")
thank you Steve,
anna



>________________________________
> De : Steve Lianoglou <mailinglist.honeypot@gmail.com>
>À : Nadira MRABET <m.nadira@yahoo.fr> 
>Cc : "bioconductor@r-project.org" <bioconductor@r-project.org> 
>Envoyé le : Jeudi 25 octobre 2012 16h08
>Objet : Re: [BioC] EdgeR: how to save results for list of genes ?
>  
>Hi,
>
>On Thu, Oct 25, 2012 at 9:55 AM, Nadira MRABET <m.nadira@yahoo.fr> wrote:
>> Hello,
>> I mean I want to wite the whole list not only the top genes!
>
>`topTags` takes a paremeter `n` which tells it how many rows of the
>table to return. You can set that number to `Inf` to get the whole
>thing.
>
>HTH,
>-steve
>
>-- 
>Steve Lianoglou
>Graduate Student: Computational Systems Biology
>| Memorial Sloan-Kettering Cancer Center
>| Weill Medical College of Cornell University
>Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>
>   
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