Hello, 
I mean I want to wite the whole list not only the top genes!
I read the help, but I still don't do it correctly.
what to do after lrt <- glmLRT(fit) to save data ?
 
thanks,
anna  
 
 
 
 
 
tab <- topTags(lrt)
  write.table(tab, file="mygenelist.txt")

For more details, type ?write.table

Gordon

>Date: Wed, 24 Oct 2012 02:32:48 -0700 (PDT) >From: "anna [guest]" <guest at bioconductor.org> >To: bioconductor at r-project.org, m.nadira at yahoo.fr >Subject: [BioC] EdgeR: 
how to save results for list of genes ? >>>
Hello, >how can I save my list of differentially expressed genes after having my top DE gene visualized with  topTags(lrt)? >>
(I followed step by step the example of carcinoma vs matched normal tissue) >>
thanks, >anna 
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