Dear list,

I'm working on a custom chip from Roche Nimblegen, I perform to create 
an Annotation package for "pd.110916.mtub.h37rv.im.exp.til" built with 
pdInfoBuilder, and I 've identified some DEG's.

Now I would like to do Gene Ontology and GSEA with these genes.I know I 
have to use these library(GOstats); library(GO.db); library(annotate)but 
I miss library(my_organisme.db).
Any annotation package from my organism (Mycobacterim tuberculosis) exists .

How can I process ? Which are suitable packages ?

Is it the best way to do ? Can I do this with my first annotation 
package "pd.110916.mtub.h37rv.im.exp.til" ?

Thank you for your reply,

Cheers,

Ingrid

-- 
Ingrid MERCIER
Mycobacterial Interactions with Host Cells Team
Institute of Pharmacology&  Structural Biology
CNRS
BP 64182
F-31077 Toulouse Cedex France
Tel +33 (0)5 61 17 54 63




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