Please read the rather extensive limma user guide:

http://www.bioconductor.org/packages/2.11/bioc/vignettes/limma/inst/doc/usersguide.pdf


On Tuesday, October 16, 2012, priya [guest] wrote:

>
> I would like to know how to determine the differentially expressed genes
> for more than two types of variables for a set of genes ?? Can this be done
> with the limma package ?? If so can anyone suggest the right tutorial ?
>
>  -- output of sessionInfo():
>
> Limma package
>
> Rversion 2.15
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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