Seems like you might have some luck if you convert your gene id's to entrez
id's

On Sunday, October 7, 2012, Michael [guest] wrote:

>
> Hi,
>
> Do you have any ideas?
> I have converted gene names many times, but still does not fit, same
> problem...
>
>  -- output of sessionInfo():
>
>
> Loading hg19 length data...
> Error in getlength(names(DEgenes), genome, id) :
>   The gene names specified do not match the gene names for genome hg19 and
> ID knownGene.
>         Gene names given were: uc002qsf.2, uc002qse.3, uc009xov.3,
> uc021rmd.1, uc001qvk.1, uc010sgm.2, uc021qum.1, uc010gzd.3, uc003ers.2,
> uc002hhv.3
>         Required gene names are: NA, NA, NA, 653635, 653635, 653635,
> 653635, 653635, 653635, 653635
>
> --
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-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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