Dear all,

First of all I'd like to apologize for bothering you with such a naive question, but I've been told that this is the place to ask about this particular issue.

I'm trying to perform a Differential Expresion analysis on some RNA-seq experiments using DEseq package. I'm not very fluent with R yet, and I'm facing some problems while using DEseq for the analysis. In my institution the R version of the Linux servers system is 2.13.0 and the version I installed in my windows terminal is 2.15.2.
I've retrieved multiple DEseq manual versions from the internet (dated 19/01/2010, 21/04/2011 and 12/04/2012) , but some R commands vary from one to another and some are not supported in one or the other R versions I have available. I need the R script to work in both versions and I don't really know how to achieve it...
Could you please help me solving this giving me some kind of advice on how to get a functional and compatible script to be used with both R versions I previously stated?

Thanks in advance for your kind support.

With best wishes

JL














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