Hi all,


I'm using goseq for the analysis of  DE genes from and RNA seq dataset-I've
only recently started using R however & am fairly clueless at straying too
far from the vignette.... I was wondering if anyone could help me with how
I could go about obtaining a list containing which of my DE genes have been
linked to the GO pathways significantly enriched in my data?.

Also -does anyone have any advice on whether its better to group test DE
genes separately with regards whether or not there up or down regulated or
just group all together ?

thanks in advance for any help-I really appreciate it!

Thanks

Emma

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