Herve,

It seems that the getSeq function does not work for scaffold sequence such as Zv9_scaffold3564:93,507-93,556 and Zv9_NA384:3,507-3,556 for BSgenome.Drerio.UCSC.danRer7_1.3.17. What is the best way to obtain such sequences using BSgenome package? Many thanks!

Best regards,

Julie

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