Dear all,
I am a R beginner and I hope you can help me.
I have a question about DESeq: DESeq works fine if I have 2
conditions(treated,untreated)
Example:
                                          treated   untreated
ENSMUSG00000000001      193     254
ENSMUSG00000000003      0       0
ENSMUSG00000000028      10      13
ENSMUSG00000000031      0       4
ENSMUSG00000000037      8       9
ENSMUSG00000000049      6       8
...
...
...


but if I have data about more than two conditions, for instance
1-month-treated,3-months-treatead, 6-months-treated,untreated, can I use
DESeq? If not, Which R package (if it exists)do you suggest to use?

Thanks in advance.
Regards.

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