Hi All,

I am trying to import few affy datasets into bioconductor.When I try the
example given in R script it works fine but not the case with the dataset I
need to import.

 gds <-
getGEO(filename=system.file("extdata/GDS2478.soft.gz",package="GEOquery"))
Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
  invalid 'nlines' argument
In addition: Warning messages:
1: In file(fname, "r") :
  file("") only supports open = "w+" and open = "w+b": using the former
2: In file(con, "r") :
  file("") only supports open = "w+" and open = "w+b": using the former
3: In file(fname, "r") :
  file("") only supports open = "w+" and open = "w+b": using the former
This what i get.

Please let me know how to rectify this. Thanks, Roopa

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