Hi,
I have a script which works fine under R-2.14.1 on windows (and previous
versions), but is throwing an error when loading the library on a fresh
build with R-2.15.1. From a bioC thread recently about arrayQualityMetrics
It looks like it is working on other platforms. The error looks like it is
a namespace dependency issue with affyPLM and Biobase::addVigs2WinMenu.

cheers,

Marcus

> library(arrayQualityMetrics)
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
  there is no package called ‘affyPLM’
Error: package/namespace load failed for ‘arrayQualityMetrics’
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=English_New Zealand.1252  LC_CTYPE=English_New
Zealand.1252    LC_MONETARY=English_New Zealand.1252
[4] LC_NUMERIC=C                         LC_TIME=English_New
Zealand.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.5.12 Biobase_2.17.7       BiocGenerics_0.3.1

loaded via a namespace (and not attached):
[1] affy_1.35.1           affyio_1.25.0         preprocessCore_1.19.0
tools_2.15.1          zlibbioc_1.3.0

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