This more informative error is from another fresh test

## Fresh Install of R-2.15.1
>source("http://www.bioconductor.org/biocLite.R")
>biocLite("arrayQualityMetrics")
...

> library(arrayQualityMetrics)
Creating a generic function for ‘boxplot’ from package ‘graphics’ in
package ‘affyPLM’
Creating a generic function for ‘hist’ from package ‘graphics’ in package
‘affyPLM’
Error : .onLoad failed in loadNamespace() for 'affyPLM', details:
  call: fun(libname, pkgname)
  error: could not find function "addVigs2WinMenu"
Error: package/namespace load failed for ‘arrayQualityMetrics’

Marcus

On Mon, Sep 3, 2012 at 1:50 PM, Marcus Davy <mdavy86@gmail.com> wrote:

> Hi,
> I have a script which works fine under R-2.14.1 on windows (and previous
> versions), but is throwing an error when loading the library on a fresh
> build with R-2.15.1. From a bioC thread recently about arrayQualityMetrics
> It looks like it is working on other platforms. The error looks like it is
> a namespace dependency issue with affyPLM and Biobase::addVigs2WinMenu.
>
> cheers,
>
> Marcus
>
> > library(arrayQualityMetrics)
> Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
>   there is no package called ‘affyPLM’
> Error: package/namespace load failed for ‘arrayQualityMetrics’
> > sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_New Zealand.1252  LC_CTYPE=English_New
> Zealand.1252    LC_MONETARY=English_New Zealand.1252
> [4] LC_NUMERIC=C                         LC_TIME=English_New
> Zealand.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.5.12 Biobase_2.17.7       BiocGenerics_0.3.1
>
> loaded via a namespace (and not attached):
> [1] affy_1.35.1           affyio_1.25.0         preprocessCore_1.19.0
> tools_2.15.1          zlibbioc_1.3.0
>
>

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