On Sat, Sep 1, 2012 at 11:20 AM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi Reema,
>
> On Sat, Sep 1, 2012 at 11:11 AM, Reema Singh <reema28sep@gmail.com> wrote:
> > Dear all
> >
> > I am getting following error, when try to get network graph using
> > GeneAnswer package
> >
> >> geneAnswersConceptNet(xx, colorValueColumn='foldChange',
> > centroidSize='pvalue', output='interactive')
> >
> >  Error in `*tmp*`[[4]] : subscript out of bounds
> >
> > Any suggestion would be a great help.
>
> You'd need to give us some reproducible example to help us to help you
> best ... for instance, what's in `xx`? Is it a matrix? data.frame?
> list? something else?
>
> You might be able to start to help yourself by calling `traceback()`
> after the error is fired to see where inside the
> `geneAnswersConceptNet` the error occurs -- this will also require you
> to start looking at the code of the `geneAnswersConceptNet` function
> to see why you are missing some expected index (which is always a good
> idea to do when you get such problems, anyway).
>
>
And don't forget to include sessionInfo().

Sean

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