Hi James,

thanks for the explanation. I do not really understand the columns yet.
Shouldn't the FC be printed for every comparison as is done for the
Coef-columns? I just get one A-column.
Is there any way of printing the results to a file with the same columns as
in topTable()?  I checked in the output after the "eBayes"-function and saw
that there was a variable called "Amean". Does it mean that the A-column in
my output file after "write.fit" is the mean of all the FCs in the
comparisons between the group of treats I am analysing?

What I really want to have in the output is a p-value column, an FC column
and an adjusted p-value column for each comparison.

Best regards

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