BSD (actually a dual BSD license from SSLeay)

http://www.openssl.org/source/license.html



On Mon, Aug 27, 2012 at 4:20 PM, Kasper Daniel Hansen <
kasperdanielhansen@gmail.com> wrote:

> You / we / someone should consider wrapping this into a more easy to
> install package, together with crlmm::readIDAT (and in case there are
> other Illumina parsing functions around, they could be included as
> well).  What is the license for openssl?
>
> Kasper
>
> On Sat, Aug 25, 2012 at 3:12 PM, Mike Smith <grimbough@gmail.com> wrote:
> > Hi Seungyeul,
> >
> > IDATreader's a pretty experimental package, but it's worked on the few
> > systems I've tested it on.  The reliance on third party libraries is
> > why I've not submitted it to Bioconductor, so they may be causing
> > problems.
> >
> > I'm not sure why you're using source(), rather than loading the
> > package via library().  Have you installed the package, or just
> > unzipped it and grabbed the .R file?  It need to be installed in order
> > to build the DLL and link against the decryption routines.  To do that
> > you need to download the tar.gz from the website you linked to and
> > then run
> >
> > R CMD INSTALL IDATreader_0.1.1.tar.gz
> >
> > in a terminal to installed the package.  You then need to load it using
> >
> > library(IDATreader)
> >
> > in your R session, rather than using source().
> >
> > Hopefully that's of some help,
> >
> > Mike
> >
> >
> >
> > On 22 August 2012 23:35, Yoo, Seungyeul <seungyeul.yoo@mssm.edu> wrote:
> >> Hi all,
> >>
> >> I'm trying to analyze Illumina array of gene expression. The file
> format is .idat which is encrypted data.
> >>
> >> I downloaded IDATreader packages as Mike suggested in some of previous
> post. I also install openssl for my mac os x.
> http://www.compbio.group.cam.ac.uk/software/idatreader
> >>
> >> But when I tried to read idat file error message is prompted.
> >>
> >> source("/Library/R/readIDAT.R")
> >> filenames<-dir(patter="idat")
> >> idat<-readIDAT(file=filenames[1])
> >>
> >>> idat<-readIDAT(file=filenames[1])
> >> Decrypting to XML
> >> Error in .C("decryptSSL", as.character(file), as.character(tempFile),  :
> >>   C symbol name "decryptSSL" not in DLL for package "IDATreader"
> >>
> >>> sessionInfo()
> >> R version 2.15.0 (2012-03-30)
> >> Platform: i386-apple-darwin9.8.0/i386 (32-bit)
> >>
> >> locale:
> >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >>
> >> attached base packages:
> >> [1] stats     graphics  grDevices utils     datasets  methods   base
> >>
> >> other attached packages:
> >> [1] BiocInstaller_1.4.7
> >>
> >> loaded via a namespace (and not attached):
> >> [1] tools_2.15.0
> >>
> >> Please let me have any advices to solve this problem.
> >>
> >> Seungyeul Yoo
> >>
> >> Postdoctoral Fellow
> >> Jun Zhu's Laboratory
> >> Institute of Genomics and Multiscale Biology
> >> Department of Genetics and Genomic Sciences
> >> Mount Sinai School of Medicine
> >>
> >>
> >>
> >>
> >>
> >>         [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioconductor mailing list
> >> Bioconductor@r-project.org
> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
> >
> >
> > --
> > Mike Smith
> > PhD Student
> > Computational Biology Group
> > Cambridge University
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
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>



-- 
*A model is a lie that helps you see the truth.*
*
*
Howard Skipper<http://cancerres.aacrjournals.org/content/31/9/1173.full.pdf>

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