BSD (actually a dual BSD license from SSLeay) http://www.openssl.org/source/license.html On Mon, Aug 27, 2012 at 4:20 PM, Kasper Daniel Hansen < kasperdanielhansen@gmail.com> wrote: > You / we / someone should consider wrapping this into a more easy to > install package, together with crlmm::readIDAT (and in case there are > other Illumina parsing functions around, they could be included as > well). What is the license for openssl? > > Kasper > > On Sat, Aug 25, 2012 at 3:12 PM, Mike Smith wrote: > > Hi Seungyeul, > > > > IDATreader's a pretty experimental package, but it's worked on the few > > systems I've tested it on. The reliance on third party libraries is > > why I've not submitted it to Bioconductor, so they may be causing > > problems. > > > > I'm not sure why you're using source(), rather than loading the > > package via library(). Have you installed the package, or just > > unzipped it and grabbed the .R file? It need to be installed in order > > to build the DLL and link against the decryption routines. To do that > > you need to download the tar.gz from the website you linked to and > > then run > > > > R CMD INSTALL IDATreader_0.1.1.tar.gz > > > > in a terminal to installed the package. You then need to load it using > > > > library(IDATreader) > > > > in your R session, rather than using source(). > > > > Hopefully that's of some help, > > > > Mike > > > > > > > > On 22 August 2012 23:35, Yoo, Seungyeul wrote: > >> Hi all, > >> > >> I'm trying to analyze Illumina array of gene expression. The file > format is .idat which is encrypted data. > >> > >> I downloaded IDATreader packages as Mike suggested in some of previous > post. I also install openssl for my mac os x. > http://www.compbio.group.cam.ac.uk/software/idatreader > >> > >> But when I tried to read idat file error message is prompted. > >> > >> source("/Library/R/readIDAT.R") > >> filenames<-dir(patter="idat") > >> idat<-readIDAT(file=filenames[1]) > >> > >>> idat<-readIDAT(file=filenames[1]) > >> Decrypting to XML > >> Error in .C("decryptSSL", as.character(file), as.character(tempFile), : > >> C symbol name "decryptSSL" not in DLL for package "IDATreader" > >> > >>> sessionInfo() > >> R version 2.15.0 (2012-03-30) > >> Platform: i386-apple-darwin9.8.0/i386 (32-bit) > >> > >> locale: > >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > >> > >> attached base packages: > >> [1] stats graphics grDevices utils datasets methods base > >> > >> other attached packages: > >> [1] BiocInstaller_1.4.7 > >> > >> loaded via a namespace (and not attached): > >> [1] tools_2.15.0 > >> > >> Please let me have any advices to solve this problem. > >> > >> Seungyeul Yoo > >> > >> Postdoctoral Fellow > >> Jun Zhu's Laboratory > >> Institute of Genomics and Multiscale Biology > >> Department of Genetics and Genomic Sciences > >> Mount Sinai School of Medicine > >> > >> > >> > >> > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor@r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > > -- > > Mike Smith > > PhD Student > > Computational Biology Group > > Cambridge University > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- *A model is a lie that helps you see the truth.* * * Howard Skipper [[alternative HTML version deleted]]