On Mon, Aug 13, 2012 at 6:09 PM, joseph <jdsandjd@yahoo.com> wrote:

> Hi
> I installed R-devel-leopard.pkg (56Mb, installer incl. GUI) from
> http://r.research.att.com/ on my Mac.
> I installed core Bioconductor packages with:
>
> source("http://bioconductor.org/biocLite.R")
>
> biocLite()
> I got the following error when I tried to load Biobase:
> Please help me to solve this issue.
>
>
> Loading required package: BiocGenerics
> Attaching package: ‘BiocGenerics’
> The following object(s) are masked from ‘package:stats’:
>     xtabs
> The following object(s) are masked from ‘package:base’:
>     anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get,
> intersect,
>  lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
> Position, rbind, Reduce,
>     rep.int, rownames, sapply, setdiff, table, tapply, union, unique
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so':
>
>
>
> dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so,
>  6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib
>   Referenced from:
> /Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so
>   Reason: image not found
> Error: package/namespace load failed for ‘Biobase’
> starting httpd help server ... done
>


>
>
> > sessionInfo()
> R Under development (unstable) (2012-08-11
>  r60235)
>

Hi, Joseph.

Bioconductor currently works with R-2.15 and not R-devel for both the
development and release versions of bioconductor.  Give the latest R-2.15 a
try and let us know if you still have problems.

Sean



> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocGenerics_0.3.1
>
> loaded via a namespace (and not attached):
> [1] tools_2.16.0
> >
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>
>
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