Thanks Jim. I saw a paper using hgug4110b.db, hence wanted to clarify.
I could not find the annotation file in the Agilent website.

Anyways, thanks for your help.

Hari

On Tue, Aug 7, 2012 at 1:27 PM, James W. MacDonald <jmacdon@uw.edu> wrote:

> Hi Hari,
>
>
> On 8/7/2012 12:30 PM, Hari Easwaran wrote:
>
>> Dear all,
>> Is the annotation package for Agilent Human GE 4x44K v2 (catalog # G4845A)
>> array available in Bioconductor. I am not sure if "hgug4110b.db" is the
>> one
>> I am looking for.
>>
>
> I am pretty sure that is not what you want. Agilent had microarrays called
> the G4110A and G4110B, and those are what the hgug4110a.db and hgug4110b.db
> are designed for.
>
> I am not familiar with Agilent's website, and a cursory glance didn't
> result in me finding the annotation file for this array. But if you have
> such a thing (with say columns that contain the Agilent ID and another with
> Gene, UniGene, RefSeq, etc type IDs), then you can create your own pretty
> easily using the AnnotationDbi package.
>
> Best,
>
> Jim
>
>
>
>
>  Can someone help?
>>
>> Thanks is advance.
>>
>> Hari
>>
>>         [[alternative HTML version deleted]]
>>
>> ______________________________**_________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
>> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
>> Search the archives: http://news.gmane.org/gmane.**
>> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>
>

	[[alternative HTML version deleted]]