Hello,

I'm trying to set up easyRNASeq on a cluster system (where I don't have root) and am getting this error:

> biocLite("easyRNASeq")
Using R version 2.11.1, biocinstall version 2.6.10.
Installing Bioconductor version 2.6 packages:
[1] "easyRNASeq"
Please wait...

Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
  argument 'lib' is missing: using '/lustre/home/aloraine/R/x86_64-pc-linux-gnu-library/2.11'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘easyRNASeq’ is not available

I found documentation that explains that this error message "package 'something' is not available' means that some dependencies are missing, which can happen if a package is not available for a given system.

This system is Linux, and I would think that would not be a problem here.

> sessionInfo()
R version 2.11.1 (2010-05-31)
x86_64-pc-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tcltk_2.11.1 tools_2.11.1

Could you help?

Best,

Ann

-------------------------------
Ann Loraine, Ph.D.
Associate Professor
Department of Bioinformatics and Genomics
University of North Carolina at Charlotte
North Carolina Research Campus
600 Laureate Way
Kannapolis, NC 28081
704-250-5750
aloraine@uncc.edu
http://www.transvar.org
http://www.bioviz.org
http://www.uncc.edu


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