Hi,

I have used DEXSeq (version 1.2.0) successfully to find differentially expressed exons in RNA-seq data. Yesterday I upgraded DEXSeq to version 1.3.13 I get the following error:

> ecs=read.HTSeqCounts(countfiles=file.path("/data/DexSeqCounts/",paste(rownames(samples),"txt",sep=".")),design=samples,flattenedfile=annotationfile)
Error: all(unlist(lapply(design, class)) == "factor") is not TRUE

Thank you in advance.

Regards,
Nirmala



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