Dear all,

I made a pipeline to analyse Illumina beadarray. I tried to install my
pipeline in a new computer. I use a filter based on the
illuminaHumanv4PROBEQUALITY function of the illuminaHumanv4.db package. In
the new computer this step don't work because some id are missing. I found
that the problem comes from illuminaHumanv4ARRAYADDRESS function that I
need to get Illumina "PROBE_ID" (ILMN_XXX) from the "probeID". There is
48107 "probeID" but only 48070 "PROBE_ID". In an older version there is
48107" probeID" and "PROBE_ID".
For example the "PROBE_ID" for the 2030348 is missing. IlluminaHumanv4.db
is valuable package so I would like to keep using it. What Can I do?

> length(illuminaHumanv4ARRAYADDRESS)
    => 48107
> length(revmap(illuminaHumanv4ARRAYADDRESS))
    => 48070

This is my first message in the bioconductor list. Please tell me if I did
something wrong.

Thank you very much.
Best regards
Amos Kirilovsky



Dr. Amos Kirilovsky
INSERM UMR-S 945
Institut fédératif  de Recherches (IFR) 113 : Immunité-Cancer-Infection
Hôpital Pitié-Salpêtrière
75651 PARIS Cedex 13
Direct Line : 33-1-42-17-7521
Secretary : 33-1-42-17-74-81

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