Hi, I never try to install all packages at one time. If you can install
individual package? If you can, then your problem is unlikely of connection
problem or access limitation.

Wen
On Jul 17, 2012 8:44 PM, "Peng Yu" <pengyu.ut@gmail.com> wrote:

> Hi,
>
> I get a warning when I try to install a bioc package.
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> is not accessible. But I don't understand why it is accessed. Does
> anybody know how to fix this problem?
>
>     source("http://bioconductor.org/biocLite.R")
>     biocLite("ALL")
>
> BiocInstaller version 1.4.7, ?biocLite for help
> BioC_mirror: http://bioconductor.org
> Using R version 2.15, BiocInstaller version 1.4.7.
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Installing package(s) 'ALL'
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> trying URL '
> http://www.bioconductor.org/packages/2.10/data/experiment/bin/macosx/leopard/contrib/2.15/ALL_1.4.12.tgz
> '
> Content type 'application/x-gzip' length 11426100 bytes (10.9 Mb)
> opened URL
> ==================================================
> downloaded 10.9 Mb
>
>
> The downloaded binary packages are in
>
> /var/folders/ok/okxjw3HGEsyvIrMaKBkHhE+++TI/-Tmp-//RtmpCArm2G/downloaded_packages
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Old packages: 'agricolae', 'animation', 'aplpack', 'aroma.affymetrix',
>   'aroma.apd', 'aroma.core', 'aroma.light', 'ca', 'Cairo', 'cairoDevice',
>   'Category', 'compositions', 'copula', 'depmixS4', 'diagram', 'dichromat',
>   'digest', 'doBy', 'drc', 'ellipse', 'elliptic', 'emulator', 'energy',
>   'Fahrmeir', 'filehash', 'fitdistrplus', 'gamlss', 'gamlss.data',
>   'gamlss.dist', 'geometry', 'glmnet', 'gmodels', 'GO.db', 'GOstats',
>   'GPArotation', 'graph', 'gridBase', 'gridExtra', 'grImport', 'GSEABase',
>   'gWidgets', 'gWidgetsRGtk2', 'gWidgetstcltk', 'HiddenMarkov',
> 'hmm.discnp',
>   'igraph', 'KEGG.db', 'lars', 'latticist', 'lavaan', 'mapdata', 'marray',
>   'matrixStats', 'mc2d', 'mcmc', 'MCMCpack', 'mouse.db0', 'msm', 'openair',
>   'org.Mm.eg.db', 'partitions', 'princurve', 'psych', 'qgraph', 'R.cache',
>   'R.filesets', 'R.huge', 'R.matlab', 'R.methodsS3', 'R.oo', 'R.rsp',
>   'R.utils', 'R2jags', 'raster', 'RBGL', 'Rcmdr', 'ReadImages', 'rggobi',
>   'RgoogleMaps', 'RGtk2', 'rJava', 'Rmpfr', 'RMySQL', 'Rsolnp',
>   'RSVGTipsDevice', 'sfsmisc', 'soiltexture', 'sos', 'splus2R',
> 'timecourse',
>   'topGO', 'TTR', 'vcdExtra', 'vrmlgen', 'WriteXLS', 'pasilla',
> 'rtracklayer'
>
>
> --
> Regards,
> Peng
>
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