Also look at the Genetics node of CRAN Task Views.

On Thu, Jul 5, 2012 at 5:50 PM, Valerie Obenchain <vobencha@fhcrc.org>wrote:

> Have a look at the snpStats and GWASTools packages.
>
> Valerie
>
>
>
> On 07/05/2012 06:31 AM, Ovokeraye Achinike-Oduaran wrote:
>
>> Thanks Mete. I know about Haploview but I was hoping to find something in
>> R.
>>
>> Thanks again.
>>
>> -Avoks
>>
>> On Thu, Jul 5, 2012 at 3:13 PM, Mete Civelek<mcivelek@mednet.ucla.**edu<mcivelek@mednet.ucla.edu>>
>>  wrote:
>>
>>> Not sure about a Bioconductor package but you can try Haploview from
>>> Broad
>>> Institute.
>>>
>>> -----Original Message-----
>>> From: bioconductor-bounces@r-**project.org<bioconductor-bounces@r-project.org>
>>> [mailto:bioconductor-bounces@**r-project.org<bioconductor-bounces@r-project.org>]
>>> On Behalf Of Ovokeraye
>>> Achinike-Oduaran
>>> Sent: Thursday, July 05, 2012 2:58 PM
>>> To: bioconductor@r-project.org
>>> Subject: [BioC] Linkage Disequilibrium Analysis
>>>
>>> Hi all,
>>>
>>> Is there a package that takes just SNPs rs IDs as input to perform LD
>>> analysis and draw haplotype blocks?
>>>
>>> Thanks.
>>>
>>> -Avoks
>>>
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