Hi there,

I found the number of pathways in KEGGPATHID2NAME is 390 while that
in KEGGPATHID2EXTID is 3152. Am I missing something? BTW, the pathway id's
used in this package seems inconsistent too.

Thanks.

Ed

> ?KEGGPATHID2NAME
>              xx <- as.list(KEGGPATHID2NAME)
>              if(length(xx) > 0){
+                      # get the value for the first key
+                      xx[[1]]
+                      # Get the values for a few keys
+                      if(length(xx) >= 3){
+                              xx[1:3]
+                      }
+              }
$`00010`
[1] "Glycolysis / Gluconeogenesis"

$`00020`
[1] "Citrate cycle (TCA cycle)"

$`00030`
[1] "Pentose phosphate pathway"

> length(xx)
[1] 390


?KEGGPATHID2EXTID
             xx <- as.list(KEGGPATHID2EXTID)
             if(length(xx) > 0){
                     # Get the value of the first key
                     xx[[1]]
                     # Get the values for multiget for a few keys
                     if(length(xx) >= 3){
                             xx[1:3]
                     }
             }
> length(xx)
[1] 3152

> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] KEGG.db_2.6.1         RSQLite_0.11.1        DBI_0.2-5
[4] AnnotationDbi_1.16.18 Biobase_2.14.0

loaded via a namespace (and not attached):
[1] IRanges_1.12.5 tools_2.14.1

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