Hi Everyone,

I was really hoping someone could help me with this; I've tried 
searching to no avail, however I apologise if something similar has been 
discussed before.

I'm trying to use crlmm to carry out LOH and CNV analysis based on .idat 
files created using the Illumina 1M bead chips.

I'm sure I've got it installed correctly (I'm new to Bioconductor, but 
I've been using R for years) and I've double-checked all my steps, but I 
can't seem to get past this problem. Under both my normal installation 
and vanilla, when I run:

crlmmIlluminaV2(sampleSheet=samplesheet,arrayNames=arrayNames,arrayInfoColNames=list(barcode=NULL,position="Sentrix_Position"),cdfName="human1mv1c",saveDate=TRUE,returnParams=TRUE,path=".")

I'm getting:

Error in crlmmIlluminaV2(sampleSheet = samplesheet, arrayNames = 
arrayNames,  :
   cdfName not valid.  see validCdfNames
In addition: Warning message:
In isValidCdfName(cdfName) :
   cdfName must be one of the following: 
genomewidesnp6genomewidesnp5human370v1chuman370quadv3chuman550v3bhuman650v3ahuman610quadv1bhuman660quadv1ahuman1mduov3bhumanomni1quadv1bhumanomniexpress12v1bhumanomni25quadv1bhumanimmuno12v1bhumancytosnp12v2p1h

..even though the reference states that it is valid for other functions. 
Can anyone give me any suggestion why this may be happening and/or how I 
can get this to work?

Many Thanks
Richard Thompson

 > sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-redhat-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_GB.utf8       LC_NUMERIC=C
  [3] LC_TIME=en_GB.utf8        LC_COLLATE=en_GB.utf8
  [5] LC_MONETARY=en_GB.utf8    LC_MESSAGES=en_GB.utf8
  [7] LC_PAPER=C                LC_NAME=C
  [9] LC_ADDRESS=C              LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] cacheSweave_0.6-1   stashR_0.3-5        filehash_2.2-1
[4] ff_2.2-7            bit_1.1-8           crlmm_1.14.2
[7] oligoClasses_1.18.0

loaded via a namespace (and not attached):
  [1] affyio_1.24.0         annotate_1.34.1       AnnotationDbi_1.18.1
  [4] Biobase_2.16.0        BiocGenerics_0.2.0    BiocInstaller_1.4.7
  [7] Biostrings_2.24.1     codetools_0.2-8       DBI_0.2-5
[10] digest_0.5.2          ellipse_0.3-7         foreach_1.4.0
[13] genefilter_1.38.0     grid_2.15.0           IRanges_1.14.3
[16] iterators_1.0.6       lattice_0.20-6        mvtnorm_0.9-9992
[19] preprocessCore_1.18.0 RSQLite_0.11.1        splines_2.15.0
[22] stats4_2.15.0         survival_2.36-14      XML_3.9-4
[25] xtable_1.7-0          zlibbioc_1.2.0
 >


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