Hi,

Using the python scripts provided in DEXSeq package (dexseq_prepare_annotation.py and dexseq_count.py) I obtained the ensemble.gff and exon counts per sample. Here's a table of the counts:


case

case

case

case

control

control

control

control

control

ENSG00000000003:001

135

173

248

262

193

213

132

207

156

ENSG00000000003:002

119

78

199

156

156

121

100

162

120

ENSG00000000003:003

90

83

156

95

109

128

62

127

111

ENSG00000000003:004

48

34

74

55

35

73

26

59

46

ENSG00000000003:005

24

13

30

33

23

35

23

27

26

ENSG00000000003:006

17

12

27

30

33

21

16

22

6

ENSG00000000003:007

51

43

83

65

77

76

21

91

51



Is there a way to import this table into DEXSeq and find the differentially expressed exons?

Thank you very much.

Regards,
Nirmala

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