Ok the error has now been fixed as of version 2.3.1.
Regarding MEDIP data, i have never tried to use the charm pipeline on MEDIP
data, though you might still get it to work. You may want to try changing
getM to define l as logit(methyl-enriched/untreated), and you may need to
use l instead of p in dmrFinder if that's the function you're using.  Good
luck.

peter

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