Hi Sam,

The only plant we have very thorough support for (so far) is 
arabidopsis.  But if you need an organism package for wheat, you can try 
to generate one using the makeOrgPackageFromNCBI() function from the 
AnnotationDbi package.  To do that you will need to specify the tax ID 
you want though.  So (as an example), is tax ID //4565 the kind of wheat 
that you are looking for (link below)???

http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4565&lvl=3&lin=f&keep=1&srchmode=1&unlock


Please let me know if you still have questions,


   Marc



On 06/13/2012 11:39 AM, Sam McInturf wrote:
> The affymetrix annotations are sparse at best, I think I will have to
> blastp to establish a file that I can use to annotate the genes using
> custom functions.
> Thank you for confirming my observation that the wheat annotations are not
> so available.
>
> Sam
>
> On Wed, Jun 13, 2012 at 11:16 AM, James W. MacDonald<jmacdon@uw.edu>  wrote:
>
>>
>> On 6/13/2012 12:09 PM, Oliver Ruebenacker wrote:
>>
>>>       Hello,
>>>
>>> On Wed, Jun 13, 2012 at 10:07 AM, James W. MacDonald<jmacdon@uw.edu>
>>>   wrote:
>>>
>>>> Unfortunately
>>>> anopheles and yeast are the only plants to have jumped that hurdle so
>>>> far.
>>>>
>>>    Neither of these is a plant, though :)
>>>
>> So you say. Next time an Anopheles *plants* its proboscis in your arm,
>> give me a call. ;-D
>>
>>
>>>       Take care
>>>       Oliver
>>>
>>>
>> --
>> James W. MacDonald, M.S.
>> Biostatistician
>> University of Washington
>> Environmental and Occupational Health Sciences
>> 4225 Roosevelt Way NE, # 100
>> Seattle WA 98105-6099
>>
>>
>


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