The GEO2R <http://www.ncbi.nlm.nih.gov/geo/geo2r/> at GEO is very good for
this purpose actually. and it does provide the R.script as well.

Alyaa

On Tue, Jun 12, 2012 at 1:54 PM, Alyaa Mahmoud <alyamahmoud@gmail.com>wrote:

> Thanks David a lot
>
> I will also check array express.
>
> Thanks for your time and prompt reply @ Sean and @ David :)
>
>
> On Tue, Jun 12, 2012 at 12:54 PM, David Westergaard <david@harsk.dk>wrote:
>
>> Dear Alyaa,
>>
>> GEO does contains preprocessed data. You may also try to look at
>> http://www.ebi.ac.uk/arrayexpress/
>>
>> Besides that, it actually doesn't take too long to learn how to
>> preprocess data. Bioconductor packages (Affy, limma) can do it in very
>> few commands.
>>
>> Best,
>> David
>>
>> 2012/6/12 Alyaa Mahmoud <alyamahmoud@gmail.com>:
>> > Hi All
>> >
>> > I would highly appreciate if you anyone would direct me to some resource
>> > for already analysed gene expression data for different human
>> conditions,
>> > e.g. cancer, diseases ..etc. i just need to collect expression status
>> of as
>> > many genes as possible in different conditions.
>> >
>> > I know of GEO ofcourse but its mostly .CEL files and I need
>> ready-processed
>> > and analysed data.
>> >
>> > Thanks a lot
>> > yours,
>> > Alyaa
>> >
>> > --
>> > Alyaa Mahmoud
>> >
>> > "Love all, trust a few, do wrong to none"- Shakespeare
>> >
>> >        [[alternative HTML version deleted]]
>> >
>> > _______________________________________________
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>> > Bioconductor@r-project.org
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>> > Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>
>
>
> --
> Alyaa Mahmoud
>
> "Love all, trust a few, do wrong to none"- Shakespeare
>
>


-- 
Alyaa Mahmoud

"Love all, trust a few, do wrong to none"- Shakespeare

	[[alternative HTML version deleted]]

