Dear list,

I am using DEXseq to look at differential exon usage and everything seems
to work just fine. When I want to create an HTML report however, I get the
following error:

> DEXSeqHTML(ecsA673vshMSC, FDR = 0.001, color = c("#FF000080",
"#0000FF80"))
Error in plot.new() : figure margins too large
In addition: Warning message:
In plotDEXSeq(ecs, geneID = gene, FDR = FDR, lwd = 2, expression = opts[1],
 :
  This gene contains more than 42 transcripts annotated, only the first 42
will be plotted

After this error, the function quits and the output is not complete. Is
there a way to turn this message off and continue outputting the rest of
the HTML report?

Thanks,

> sessionInfo()
R version 2.14.2 (2012-02-29)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C/en_US.UTF-8/C/C/C/C

attached base packages:
[1] grDevices datasets  splines   graphics  utils     grid      stats
methods   base

other attached packages:
 [1] edgeR_2.4.6        limma_3.10.3       biomaRt_2.10.0     DEXSeq_1.0.2
      Biobase_2.14.0     plyr_1.7.1         reshape2_1.2.1
 [8] survival_2.36-14   RSQLite_0.11.1     DBI_0.2-5          knitr_0.5
     gplots_2.10.1      KernSmooth_2.23-7  caTools_1.12
[15] bitops_1.0-4.1     gdata_2.8.2        gtools_2.6.2
RColorBrewer_1.0-5 ggplot2_0.9.1

loaded via a namespace (and not attached):
 [1] MASS_7.3-18      RCurl_1.91-1     Rcpp_0.9.10      XML_3.9-4
 codetools_0.2-8  colorspace_1.1-1 dichromat_1.2-4  digest_0.5.2
 [9] evaluate_0.4.2   formatR_0.4      highlight_0.3.1  hwriter_1.3
 labeling_0.1     memoise_0.1      munsell_0.3      parser_0.0-14
[17] proto_0.3-9.2    scales_0.2.1     statmod_1.4.14   stringr_0.6
 tools_2.14.2

-- 
*Ahmet Z.*

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