Hi,

Thanks for getting back to me.

If I read the two file types in separately, would it be possible to then normalise and analyse the data together (after merging)? I am hoping to follow a protocol similar to that outlined here: http://matticklab.com/index.php?title=Single_channel_analysis_of_Agilent_microarray_data_with_Limma

Thanks,

Parisa


On 1 Jun 2012, at 11:19, Gordon K Smyth wrote:

No, it can't combine any two types.  Read them in instead using separate
calls to read.maimages().

Gordon

On Fri, 1 Jun 2012, Parisa Razaz wrote:

Hi,

Is it possible to read in both Bluefuse and Agilent files together using the read.maimages() function in limma?

Thanks,

Parisa

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