On Wed, May 30, 2012 at 5:37 AM, <ecsi@gmx.net> wrote:

> Good morning,
>
>  > mypath <- "C:/Users/bioinf_admin/**Desktop/"
>> > GSE19711 <- getGEO('GSE19711',destdir=**mypath)
>>
>
> I tried this, changing mypath to a mapped network drive directory (Z:/).
> Generally it worked, but files were downloaded to a directory at my local
> hard disk (C:/) which is not desired (see below, sorry for the german, R
> sometimes gives german errors when using german locale settings at system
> level). How can I tell GEOquery that all files must be downloaded to the
> directory given in "mypath"?
>
>   GSE19711<- getGEO("GSE19711", destdir=mypath)
>>
> Found 3 file(s)
> GSE19711_series_matrix-1.txt.**gz
> versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/**pub/geo/DATA/SeriesMatrix/**
> GSE19711/GSE19711_series_**matrix-1.txt.gz<ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-1.txt.gz>
> '
> using Synchronous WinInet calls
> URL geöffnet
> downloaded 27.9 Mb
>
> File stored at:
> C:\Users\Myuser\AppData\Local\**Temp\RtmpOWBTrt/GPL8490.soft
>

Sorry, Simone.  That is a bug.  It has been fixed in GEOquery and will be
available as a new version in a day or so.

Sean




> GSE19711_series_matrix-2.txt.**gz
> versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/**pub/geo/DATA/SeriesMatrix/**
> GSE19711/GSE19711_series_**matrix-2.txt.gz<ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-2.txt.gz>
> '
> using Synchronous WinInet calls
> URL geöffnet
> downloaded 27.8 Mb
>
> Using locally cached version of GPL8490 found here:
> C:\Users\Myuser\AppData\Local\**Temp\RtmpOWBTrt/GPL8490.soft
> GSE19711_series_matrix-3.txt.**gz
> versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/**pub/geo/DATA/SeriesMatrix/**
> GSE19711/GSE19711_series_**matrix-3.txt.gz<ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-3.txt.gz>
> '
> using Synchronous WinInet calls
> URL geöffnet
> downloaded 3.5 Mb
>
> Using locally cached version of GPL8490 found here:
> C:\Users\Myuser\AppData\Local\**Temp\RtmpOWBTrt/GPL8490.soft
> Warnmeldung:
> In download.file(myurl, destfile, mode = mode, quiet = TRUE, method =
> getOption("download.file.**method.GEOquery")) :
>  heruntergeladene Länge 23108257 != angegebener Länge 200
>
>
> Best,
> Simone
>
> ______________________________**_________________
> Bioconductor mailing list
> Bioconductor@r-project.org
> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
> Search the archives: http://news.gmane.org/gmane.**
> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>

	[[alternative HTML version deleted]]

