Hi,

I wanted to conduct GSEA analysis on methylation data (illumina 27k). After conducting a differential analysis, I have a list of genes along with their pvalues and t-statistics. Is there a way that I can conduct a GSEA analysis with this data? Which packages should I be looking at?


I have looked at a few of the GSEA packages, but they all seem to be based on gene expression data (and chips/annotation packages etc.). 

thanks!

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