On Sun, May 20, 2012 at 11:57 AM, Tim Smith <tim_smith_666@yahoo.com> wrote:

> Hi,
>
> I wanted to conduct GSEA analysis on methylation data (illumina 27k).
> After conducting a differential analysis, I have a list of genes along with
> their pvalues and t-statistics. Is there a way that I can conduct a GSEA
> analysis with this data? Which packages should I be looking at?
>
>
Assuming that you might have used limma for differential expression, you
could take a look at the roast, romer, and camera functions.

Sean



>
> I have looked at a few of the GSEA packages, but they all seem to be based
> on gene expression data (and chips/annotation packages etc.).
>
> thanks!
>
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