You might try looking at the limma package.  If you are new to the field,
it is a good idea to find a local collaborator to help you through the data.

Sean
On May 7, 2012 9:22 AM, "JiangZhengyu" <zhyjiang2006@hotmail.com> wrote:

>
>
>
>
> Hi there, I am trying to use calculate p value and FDR for illumina
> microarry platform.  I am really new to this field and found there are many
> package in bioconductor. Does anyone can give any recommendations?
> Thanks,Zhengyu
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