Dear Valerie, Thank you for your answer!



Using your script I got now the list of translated transcripts that contain the amino acid patterns I am interested in.



Here are their names:> names(cds_seqs[i])   [1] "uc001ack.2" "uc001acv.3" "uc001adm.3" "uc001ado.3" "uc001adp.3" "uc001adq.3" "uc001adr.3" "uc001aee.1" "uc001aef.1"  [10] "uc009vjz.1" "uc010nyj.1" "uc001aer.4" "uc009vkz.1" "uc010nyz.2" "uc001aji.1" "uc009vle.1" "uc001ajj.1" "uc001ajk.1"  [19] "uc001ajy.2"…



The question now is how do I go from these names to conventional protein names and (or) ENTREZ identifiers?



Thank you very much for your help!



Best regards,

Boris



Dr. Boris Zybaylov
Instructor
Department of Biochemistry and Molecular Biology
University of Arkansas Medical Sciences
Little Rock, AR
1-501-686-7254
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