there is vennDiagram, vennCounts in limma package. But only for 3 groups.
It can not deal with more then 3 groups.

On Sun, Apr 22, 2012 at 11:02 AM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Forgot to CC list:
>
> Hi Stefi,
>
> On Sat, Apr 21, 2012 at 2:30 PM, Stefanie Gerstberger
> <stefanie.gerstberger@ymail.com> wrote:
> >
> >
> > Hi list,
> > I'm looking for a scalable way to draw venn diagrams. I previously used
> vennerable, but this doesn't seem to be supported any more in R version
> 2.13.
> > is there any other way to draw scaled venn diagrams?
>
> Not sure, but this thread seems to suggest gplots has some venn
> diagram capability and also mentions another package called venneuler:
>
> http://cran.r-project.org/web/packages/venneuler/index.html
>
> But still, assuming you have Vennerable's dependencies installed, I
> suspect you can get Vennerable to install if you specify
> type="source". Instead of this:
>
> > install.packages("Vennerable", repos="http://R-Forge.R-project.org")
> > Warning: unable to access index for repository
> http://R-Forge.R-project.org/bin/macosx/leopard/contrib/2.13
>
> Try:
>
> install.packages("Vennerable", repos="http://r-forge.r-project.org",
> type="source")
>
> (or you can also svn checkout the package and `R CMD INSTALL` from the
> command line)
>
> HTH,
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
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>



-- 


Wenhuo Hu
Park lab

Memorial Sloan Kettering Cancer Center
Zuckerman Research Building
408 East 69th Street
Room ZRC-527
New York, NY 10065
Phone 646-888-3220
huw@mskcc.org

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