Dear All,

I would like to compute the NUSE (Normalized Unscaled Standard Errors) from
agilent microarray data.

Since the way I've found to do this is to use affyPLM library, using fitPLM
function, which require an affyBatch object, I was wondering if there is
any possibilities to use lmFit from LIMMA package to achive this goal ?

I could also create an affybatch object using my agilent data but still, I
would rather have a function which take RGList (or MAList) object instead
of affyBatch.

Is there a way to model probes and array effect using lmFit  ?


Many thanks by advance

--
Bill Fends

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