Dear all,
In GeneAnswers,
when I run this getGOList(c('56458', '16590'), 'org.Mm.eg.db', GOCat='BP', level=2)
switch level=2 to level=3 for GOCat='BP' it is working (indicating different GO number)

but when I set up GOCat='CC' between level=2 and level=3 has the same GO number

why the level has not effect on GO number when I set up GOCat='CC'


length(getGOList(c('56458', '16590'), 'org.Mm.eg.db', GOCat='BP', level=2)) [1] 314 > length(getGOList(c('56458', '16590'), 'org.Mm.eg.db', GOCat='BP', level=3)) [1] 246 > length(getGOList(c('56458', '16590'), 'org.Mm.eg.db', GOCat='CC', level=3)) [1] 43 > length(getGOList(c('56458', '16590'), 'org.Mm.eg.db', GOCat='CC', level=2)) [1] 43

thanks

Zhi Zhang, Ph. D.
Sanford-Burnham Medical Research Institute
Building 7, Bodmer lab
10901 North Torrey Pines Rd.
La Jolla, CA 92037, USA
Phone 858-646-3100 ext. 3801
Fax 858-795-5298



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