Hi, Dr. Pan,
I am very impressive on lumi package that you developed and I am going to apply it to my HM450K dataset and put your paper as citation.

Can I have a simple question on reading file? As your example file is different from what I got with HM450K file processed by GenomeStudio.
Would you please tell me how to read HM450K file into Lumi and annotation library, what format of input file should I prepare? Idat file or csv file, which column is required to compatible with your package?

How to prepare my HM450K data to the same format of example.lumiMethy?

I appreciate so much for your great help!

PhD student in MD Anderson Cancer Center
Kathy (Xin Hu)



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