This isn't really a Bioconductor question, but for general bioinformatics
questions you can try Biostar: http://biostar.stackexchange.com/

Paul.

On Fri, Apr 6, 2012 at 12:49 PM, wenhuo hu <huwenhuo@gmail.com> wrote:

> Hi all,
>
> I have a question about GSEA analysis. There is an item about phenotype
> lable in Java version GSEA, it is about the .cls data, with an extension,
> e.g. "WT~KO", or "KO~"WT". I tried both way, the results are quite
> different. The way described in the original paper on how GSEA works does
> not seem give an excuse how this parameter affect the results, and why this
> happened. Please help!
>
> Wenhuo Hu,
> MSKCC
>
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>
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-- 
Paul Geeleher (PhD Student)
School of Mathematics, Statistics and Applied Mathematics
National University of Ireland
Galway
Ireland
--
www.bioinformaticstutorials.com

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