Thank you Dan.

I've been searching that package. I found  this
page<http://www.omegahat.org/RCurl/FAQ.html>
.

As you mentioned, the problem is RCurl. Now It works correctly, I installed
RCurl by terminal (R CMD INSTALL RCurl.....tar.gz). Then run R and
installed with biocLite("Genominator").
When it was in installation, there were no errors, and installed every
dependencies.

Thank you Dan.

Best regards.

José

2012/4/3 Dan Tenenbaum <dtenenba@fhcrc.org>

> Hello Jose,
>
> On Tue, Apr 3, 2012 at 12:21 PM, Jose Lopez [guest]
> <guest@bioconductor.org> wrote:
> >
> > I already used
> >
> > source("http://bioconductor.org/biocLite.R")
> > biocLite("Genominator")
> > Warning messages:
> > 1: In install.packages(pkgs = pkgs, repos = repos, ...) :
> >  installation of package 'RCurl' had non-zero exit status
> > 2: In install.packages(pkgs = pkgs, repos = repos, ...) :
> >  installation of package 'biomaRt' had non-zero exit status
> > 3: In install.packages(pkgs = pkgs, repos = repos, ...) :
> >  installation of package 'GenomeGraphs' had non-zero exit status
> > 4: In install.packages(pkgs = pkgs, repos = repos, ...) :
> >  installation of package 'Genominator' had non-zero exit status
> >
> > I already tried with others packages and had no problem.
> >
> > Apparently is the biomaRt package, when tried to install it directly, I
> had the same problem. What do I need to do?
>
> What makes you say that biomaRt is the problem? It looks like RCurl is
> the problem.
>
> But...what are your CRAN and Bioconductor mirrors set to? What happens
> if you start R as follows:
>
> R --vanilla
>
> Try that and let us know if it works.
>
>
> Also, as always, we recommend working with the latest release version
> of R (2.15) if possible.
>
> Thanks,
> Dan
>
>
> >
> > Thank you.
> >
> >  -- output of sessionInfo():
> >
> > R version 2.12.1 (2010-12-16)
> > Platform: i686-pc-linux-gnu (32-bit)
> >
> > locale:
> >  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
> >  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
> >  [5] LC_MONETARY=C              LC_MESSAGES=en_GB.UTF-8
> >  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
> >  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> > [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > loaded via a namespace (and not attached):
> > [1] tools_2.12.1
> >
> > --
> > Sent via the guest posting facility at bioconductor.org.
> >
> > _______________________________________________
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>

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