Marc was working on this during the course in Feb. Not sure what happened
to it. He said it was simple. Maybe just waiting for the release to pass.

Michael

On Tue, Apr 3, 2012 at 3:40 PM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi,
>
> On Tue, Apr 3, 2012 at 4:41 PM, Sang Chul Choi <schoi@cornell.edu> wrote:
> > Hi,
> >
> > I am wondering if I could create a TranscriptDb object (library
> GenomicFeatures) using a gff3 file.  I could read a gff3 file using
> import.gff3, but I could not find a way to create TranscriptDb object from
> the object from import.gff3.
> >
> > Two arguments for makeTranscriptDb are required: transcripts, splicings.
> It does not seem to be easy to parse this information from the object form
> import.gff3.  I will appreciate any help.
>
> As far as I know, this functionality isn't there yet ...
>
> I once (early feb, 2012) suggested I might take a crack at making this
> happen but haven't actually found the time to do it ... I'm not sure
> anyone in bioc-core land (hi, Marc) has found the time to do it
> either, so I think you're out of luck.
>
> Sorry for that. But the good news is that I bet a patch that does this
> would be welcome ;-)
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
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