On Mon, Mar 26, 2012 at 3:47 AM, Milica Krunic <milica.crown@gmail.com>wrote:

> Hello!
>
>
> Does anyone know how to save GRangesList object to a file? And how to
> convert it to a GFF file?
>
>
As Vince mentioned, it is possible to use rtracklayer::export() to generate
a GFF file. In devel (soon to be released), you can simply pass the
GRangesList to export. Behind the scenes, this calls asGFF() to get a
GRanges with the metadata columns that encode the hierarchical structure
according to the GFF3 spec. This is then converted to a RangedData and
exported.

Michael


> Thank you!
>
>
> Best,
> Milica
>
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