On Mon, Mar 26, 2012 at 6:47 AM, Milica Krunic <milica.crown@gmail.com>wrote:

> Hello!
>
>
> Does anyone know how to save GRangesList object to a file? And how to
> convert it to a GFF file?
>
>
You can save any R object to a file using save(), so please read the
documentation on that (?save) ... it saves
the contents of the object in an R-oriented format, for later restoration
using load().

To save content of a GRangesList to a GFF file, use the export() methods of
rtracklayer.  I don't think you can export
a GRangesList directly, but apply unlist() first, and use code like that
given with ?export, in the examples section, in which a connection and
export format is defined.

Thank you!
>
>
> Best,
> Milica
>
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