Hi Jim,



Thanks for your proposal, as you thought I’m using GOstats package (Agilent for
mouse).

I was trying to figure out how to use probeSetSummary function and I found the
following error:



probeSetSummary(myhyperGTest)



Error en get(mapName, envir = pkgEnv, inherits = FALSE) :

  Object 'org.Mm.egENTREZID' not found



So I need to check my code and find out where the problem is. Do you have any
advice?



Thanks,



Lola.


El 22 de marzo de 2012 a las 14:15 "James W. MacDonald" <jmacdon@uw.edu>
escribió:

> Hi Lola,
>
> On 3/22/2012 8:33 AM, Lola Guerrero wrote:
> > Dear all,
> >
> >
> >
> > I have run a Hypergeometric test and so far so good. Now I am interested in
> > the
> > gene set that belong to a particular ontology. Do you know if exist any way
> > to
> > access to these genes? I mean, if for example I have an ontology which is
> > defined by 10 genes and in my case the test count 5, how can I access to
> > these
> > genes?
>
> It depends on what package you used. If you used the GOstats package,
> then there is probeSetSummary().
>
> Best,
>
> Jim
>
>
> >
> >
> >
> > Iâ€™ll appreciate any help! Thank you very much for your help!
> >
> >
> >
> > Lola Guerrero
> >
> >
> >         [[alternative HTML version deleted]]
> >
> >
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> > http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>
	[[alternative HTML version deleted]]

