hello All ,
I was trying to install RGrphaviz packge in R from :
http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html

but could not successfully either in Linux or windows

In windows it says :
*The program can not start because libctd-4.dll missing *
*
*
In Linnux (Ubuntu 11 .10 ) it says :

ERROR: configuration failed for package ‘Rgraphviz’v ..

Can anyone please explain what exactly the problem  : Is tha correct
 version of the program .. ?   or do we need
to additional configuration setting  ?

I Google it but the discussion posts are quite old .. so please help me

Thanks

Regards
-Amit Kumar





>     source("http://bioconductor.org/biocLite.R")
BioC_mirror = http://bioconductor.org
Change using chooseBioCmirror().
Warning messages:
1: In safeSource() : Redefining ‘biocinstall’
2: In safeSource() : Redefining ‘biocinstallPkgGroups’
3: In safeSource() : Redefining ‘biocinstallRepos’
>     biocLite("Rgraphviz")
Using R version 2.13.1, biocinstall version 2.8.4.
Installing Bioconductor version 2.8 packages:
[1] "Rgraphviz"
Please wait...

Installing package(s) into ‘/home/amit/R/x86_64-pc-linux-gnu-library/2.13’
(as ‘lib’ is unspecified)
trying URL '
http://bioconductor.org/packages/2.8/bioc/src/contrib/Rgraphviz_1.30.1.tar.gz
'
Content type 'application/x-gzip' length 730304 bytes (713 Kb)
opened URL
==================================================
downloaded 713 Kb

* installing *source* package ‘Rgraphviz’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for whether compiler has bool... yes
configure: No --with-graphviz option was specified. Trying to find Graphviz
using other methods.
checking for pkg-config... /usr/bin/pkg-config
Package libgvc was not found in the pkg-config search path.
Perhaps you should add the directory containing `libgvc.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libgvc' found
configure: pkg-config was not able to find the Graphviz library libgvc.
This either indicates that Graphviz is old or that something is wrong.
Verify Graphviz is installed and that PKG_CONFIG_PATH is correct.
checking for dotneato-config... no
configure: dotneato-config not found in PATH.
configure: Using default directory /usr/local, consider specifiying
--with-graphviz
configure: error: /usr/local/bin/dot not found.  Check Graphviz
installation.
ERROR: configuration failed for package ‘Rgraphviz’
* removing ‘/home/amit/R/x86_64-pc-linux-gnu-library/2.13/Rgraphviz’

The downloaded packages are in
‘/tmp/RtmpyHrdSv/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'Rgraphviz' had non-zero exit status

	[[alternative HTML version deleted]]

