Hi,

Wondering if anyone else has come across this error or knows the cause of it.


"Error in if (mm < 0.01) { : missing value where TRUE/FALSE needed"

Encountered it while trying to read 450k raw data output from GenomeStudio using the lumiMethyR function. The file 
size is 3.8GB and it has data from 60 arrays. R processed it for quite some time before it stopped, giving the error message. 

Thanking you in advance,
Khadeeja



    > sessionInfo()
    R version 2.13.0 (2011-04-13)
    Platform: x86_64-unknown-linux-gnu (64-bit)

    locale:
     [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
     [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
     [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
     [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
     [9] LC_ADDRESS=C               LC_TELEPHONE=C
    [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

    attached base packages:
    [1] stats     graphics  grDevices utils     datasets  methods   base

    other attached packages:
    [1] lumi_2.4.0     nleqslv_1.8.5  Biobase_2.12.1

    loaded via a namespace (and not attached):
     [1] affy_1.30.0           affyio_1.20.0         annotate_1.30.0
     [4] AnnotationDbi_1.14.1  DBI_0.2-5             grid_2.13.0
     [7] hdrcde_2.15           KernSmooth_2.23-4     lattice_0.19-23
    [10] MASS_7.3-12           Matrix_0.999375-50    methylumi_1.8.0
    [13] mgcv_1.7-5            nlme_3.1-100          preprocessCore_1.14.0
    [16] RSQLite_0.9-4         xtable_1.5-6
    >
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