Hi Ricardo,

Sorry about the delay.  Things are going into "release mode" around 
here, which means we are all extremely busy.  These warnings are not 
really new for KEGGSOAP and I would not worry too much about them.  The 
functions you wrote appear to work just fine and it is possible that 
others may find them useful.  With your permission, I would love to add 
them to the package.  If you provide me with a manual page describing 
them (with your name as the author) then I will be happy to add them to 
the existing KEGGSOAP package for you.


   Marc



On 03/07/2012 09:46 AM, Ricardo Silva wrote:
> Hi everyone,
>
> I've added a function that I need to the KEGGSOAP package (in bold), as a
> copy of an existing function, bellow, in the KEGGSOAP.R, and then installed
> the function successfully, but I got this error message when I am
> installing or loading the package
>
> Note: Method with signature "PrimitiveSOAPType#list" chosen for function
> "resolve",
>   target signature "PrimitiveSOAPType#SchemaCollection".
>   "SOAPType#SchemaCollection" would also be valid
> Note: Method with signature "ArrayType#list" chosen for function "resolve",
>   target signature "ArrayType#SchemaCollection".
>   "SimpleSequenceType#SchemaCollection" would also be valid
> Mensagens de aviso perdidas:
> 1: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no
> metadata object found to revise subclass information---not exported?
>   Making a copy in package '.GlobalEnv'
> 2: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema')
> but no metadata object found to revise subclass information---not exported?
>   Making a copy in package '.GlobalEnv'
>
> is there sometinhg more that I've to change? Can I redistribute this
> package with my own just letting the credits?
>
> *get.reactions.by.compound
> function (compound.id)
> {
>     unlist(.SOAP(KEGGserver, "get_reactions_by_compound", .soapArgs =
> list(compound_id =compound.id),
>         action = KEGGaction, xmlns = KEGGxmlns, nameSpaces =
> SOAPNameSpaces(version = KEGGsoapns)))
> }
> <environment: namespace:KEGGSOAP>*
> *
> *get.reactions.by.pathway
> function (pathway.id)
> {
>     unlist(.SOAP(KEGGserver, "get_reactions_by_pathway", .soapArgs =
> list(pathway_id =pathway.id),
>         action = KEGGaction, xmlns = KEGGxmlns, nameSpaces =
> SOAPNameSpaces(version = KEGGsoapns)))
> }
> <environment: namespace:KEGGSOAP>
>
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>
>
>
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